If you search the internet you will find hundreds of different types of knots and loops for fishing. Each one is used for a specific application, but there are only a few that you really need to be familiar with for fly fishing. At some point in your fly fishing adventure you may need to understand how to tie a Bimini Twist or Plaited Double loop, but those are not every day knots.
Knots
Loops
Joining Lines
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Some Good Knots Websites:
THE ULTIMATE GUIDE TO FISHING KNOTS, HOOKS, BAIT, AND LURES (Supplied by HMY Yachts)
Orvis Learning Center Fly Fishing Knots (Supplied by Orvis Retail Stores)
Animated Fishing Knots (Supplied by Grog)